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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
30/08/2022 |
Actualizado : |
30/08/2022 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
CARRACELAS, B.; NAVAJAS, E.; VERA, B.; CIAPPESONI, G. |
Afiliación : |
EMERITA BEATRIZ CARRACELAS MARQUEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ELLY ANA NAVAJAS VALENTINI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; BRENDA VERA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS GABRIEL CIAPPESONI SCARONE, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
Título : |
Genome-wide association study of parasite resistance to gastrointestinal nematodes in Corriedale sheep. |
Fecha de publicación : |
2022 |
Fuente / Imprenta : |
Genes, 2022, vol. 13, issue 9, 1548. OPEN ACCESS. doi: https://doi.org/10.3390/genes13091548 |
ISSN : |
e-ISSN 2073-4425 |
DOI : |
10.3390/genes13091548 |
Idioma : |
Inglés |
Notas : |
Article history: Received 25 May 2022; Revised 19 August 2022; Accepted 23 August 2022; Published 27 August 2022.
Correspondence: gciappesoni@inia.org.uy -- Academic Editor: Qiuyue Liu.
License: This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
This article belongs to the Collection Feature Papers in Animal Genetics and Genomics: https://www.mdpi.com/journal/genes/topical_collections/feature_paper_animal |
Contenido : |
ABSTRACT.- Selection of genetically resistant animals is one alternative to reduce the negative impact of gastrointestinal nematodes (GIN) on sheep production. The aim of this study was to identify genomic regions associated with GIN resistance in Corriedale sheep by single-step genome-wide association studies (ssGWAS) using 170, 507 and 50K single nucleotide polymorphisms (SNPs). Analysis included 19,547 lambs with faecal egg counts (FEC) records, a pedigree file of 40,056 animals and 454, 711 and 383 genotypes from 170, 507 and 50K SNPs, respectively. Genomic estimated breeding values (GEBV) were obtained with single-step genomic BLUP methodology (ssGBLUP), using a univariate animal model, which included contemporary group, type of birth and age of dam as class fixed effects and age at FEC recording as covariate. The SNP effects as wells as p-values were estimated with POSTGSF90 program. Significance level was defined by a chromosome-wise False Discovery Rate of 5%. Significant genomic regions were identified in chromosomes 1, 3, 12 and 19 with the 170 SNP set, in chromosomes 7, 12 and 24 using the 507 SNP chip and only in chromosome 7 with the 50K SNP chip. Candidate genes located in these regions, using Oar_v4.0 as reference genome, were TIMP3, TLR5, LEPR and TLR9 (170 SNPs), SYNDIG1L and MGRN1 (507 SNP chip) and INO80, TLN2, TSHR and EIF2AK4 (50K SNP chip). These results validate genomic regions associated with FEC previously identified in Corriedale and other breeds and report new candidate regions for further investigation. © 2022 by the authors. Licensee MDPI, Basel, Switzerland. MenosABSTRACT.- Selection of genetically resistant animals is one alternative to reduce the negative impact of gastrointestinal nematodes (GIN) on sheep production. The aim of this study was to identify genomic regions associated with GIN resistance in Corriedale sheep by single-step genome-wide association studies (ssGWAS) using 170, 507 and 50K single nucleotide polymorphisms (SNPs). Analysis included 19,547 lambs with faecal egg counts (FEC) records, a pedigree file of 40,056 animals and 454, 711 and 383 genotypes from 170, 507 and 50K SNPs, respectively. Genomic estimated breeding values (GEBV) were obtained with single-step genomic BLUP methodology (ssGBLUP), using a univariate animal model, which included contemporary group, type of birth and age of dam as class fixed effects and age at FEC recording as covariate. The SNP effects as wells as p-values were estimated with POSTGSF90 program. Significance level was defined by a chromosome-wise False Discovery Rate of 5%. Significant genomic regions were identified in chromosomes 1, 3, 12 and 19 with the 170 SNP set, in chromosomes 7, 12 and 24 using the 507 SNP chip and only in chromosome 7 with the 50K SNP chip. Candidate genes located in these regions, using Oar_v4.0 as reference genome, were TIMP3, TLR5, LEPR and TLR9 (170 SNPs), SYNDIG1L and MGRN1 (507 SNP chip) and INO80, TLN2, TSHR and EIF2AK4 (50K SNP chip). These results validate genomic regions associated with FEC previously identified in Corriedale and other breeds an... Presentar Todo |
Palabras claves : |
FEC; Genomic regions; SsGWAS. |
Asunto categoría : |
L01 Ganadería |
URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16636/1/genes-13-01548-v2.pdf
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Marc : |
LEADER 02850naa a2200229 a 4500 001 1063548 005 2022-08-30 008 2022 bl uuuu u00u1 u #d 022 $ae-ISSN 2073-4425 024 7 $a10.3390/genes13091548$2DOI 100 1 $aCARRACELAS, B. 245 $aGenome-wide association study of parasite resistance to gastrointestinal nematodes in Corriedale sheep.$h[electronic resource] 260 $c2022 500 $aArticle history: Received 25 May 2022; Revised 19 August 2022; Accepted 23 August 2022; Published 27 August 2022. Correspondence: gciappesoni@inia.org.uy -- Academic Editor: Qiuyue Liu. License: This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). This article belongs to the Collection Feature Papers in Animal Genetics and Genomics: https://www.mdpi.com/journal/genes/topical_collections/feature_paper_animal 520 $aABSTRACT.- Selection of genetically resistant animals is one alternative to reduce the negative impact of gastrointestinal nematodes (GIN) on sheep production. The aim of this study was to identify genomic regions associated with GIN resistance in Corriedale sheep by single-step genome-wide association studies (ssGWAS) using 170, 507 and 50K single nucleotide polymorphisms (SNPs). Analysis included 19,547 lambs with faecal egg counts (FEC) records, a pedigree file of 40,056 animals and 454, 711 and 383 genotypes from 170, 507 and 50K SNPs, respectively. Genomic estimated breeding values (GEBV) were obtained with single-step genomic BLUP methodology (ssGBLUP), using a univariate animal model, which included contemporary group, type of birth and age of dam as class fixed effects and age at FEC recording as covariate. The SNP effects as wells as p-values were estimated with POSTGSF90 program. Significance level was defined by a chromosome-wise False Discovery Rate of 5%. Significant genomic regions were identified in chromosomes 1, 3, 12 and 19 with the 170 SNP set, in chromosomes 7, 12 and 24 using the 507 SNP chip and only in chromosome 7 with the 50K SNP chip. Candidate genes located in these regions, using Oar_v4.0 as reference genome, were TIMP3, TLR5, LEPR and TLR9 (170 SNPs), SYNDIG1L and MGRN1 (507 SNP chip) and INO80, TLN2, TSHR and EIF2AK4 (50K SNP chip). These results validate genomic regions associated with FEC previously identified in Corriedale and other breeds and report new candidate regions for further investigation. © 2022 by the authors. Licensee MDPI, Basel, Switzerland. 653 $aFEC 653 $aGenomic regions 653 $aSsGWAS 700 1 $aNAVAJAS, E. 700 1 $aVERA, B. 700 1 $aCIAPPESONI, G. 773 $tGenes, 2022, vol. 13, issue 9, 1548. OPEN ACCESS. doi: https://doi.org/10.3390/genes13091548
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Registro original : |
INIA Las Brujas (LB) |
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Registros recuperados : 5 | |
1. | | PESSOA, D. A. N.; SILVA, L. C. A.; MENDONÇA, F. S.; ALMEIDA, V. M.; LOPES, J. R. G.; ALBUQUERQUE, L. G.; SILVA, A. .; RIET-CORREA, F. Evaluation of resistance to natural poisoning by Amorimia septentrionalis in goats which had received sodium monofluoroacetate degrading bacteria. [Avaliação da resistência à intoxicação natural por Amorimia septentrionalis em caprinos que receberam bactérias degradadoras de monofluoroacetato de sódio.] Pesquisa Veterinaria Brasileira 38(10):1913-1917, 1 October 2018. OPEN ACCESS Article history: Received on June 5, 2018. // Accepted for publication on June 13, 2018.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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2. | | MENDONÇA, F.S.; NASCIMENTO , N.C. F.; ALMEIDA, V.M.; BRAGA, T.C.; RIBEIRO, D.P.; CHAVES, H.A.S.; SILVA FILHO , G.B.; RIET-CORREA, F. An outbreak of poisoning by Kalanchoe blossfeldiana in cattle in northeastern Brazil. Tropical Animal Health and Production, 2018, v. 50, n. 3, p. 693-696. Article History: Received: 17 February 2017 /Accepted: 30 October 2017 / Published online: 16 November 2017.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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3. | | SOUSA, R.F.A.; ALMEIDA, V.M.; NETO, J.E.; NASCIMENTO, C.W.A.; MEDEIROS, G.X.; MEDEIROS, R.M.T.; RIET-CORREA, F.; MENDONÇA, F.S. Laryngeal neuropathy in adult goats with copper deficiency. Veterinary Pathology, 2017, v. 54, n.4., p.676-682. Article history: Article first published online: December 14, 2016.//Issue published: July 1, 2017.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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4. | | ALMEIDA, T.H.S.; ALBUQUERQUE, R.; ALMEIDA, V.M.; SILVA FILHO, G.B.; CHAVES, H.A.; FREITAS, S.H.; RIET-CORREA, F.; MENDONÇA, F.S. Poisoning by Thiloa glaucocarpa (Combretaceae) in cattle in the semiarid regions of Paraíba and Pernambuco, Brazil. Brazilian Journal of Veterinary Pathology, November 2017, Volume 10, Issue 3, Pages 111-116. OPEN ACCESS Article history: Submitted July 5, 2017 / Accepted August 13. 2017.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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5. | | BRITO, L.B; RIET-CORREA, F.; ALMEIDA, V.M.; SILVA FILHO, G.B.; CHAVES, A.S.; BRAGA, T.C.; NETO, J.E.; MENDONÇA, F.S. Spontaneous poisoning by Ricinus communis leaves (Euphorbiaceae) in goats. [Intoxicação espontânea por folhas de Ricinus communis (Euphorbiaceae) em caprinos.] Pesquisa Veterinaria Brasileira, 1 February 2019, Volume 39, Issue 2, Pages 123-128. OPEN ACCESS. Doi: http://dx.doi.org/10.1590/1678-5150-pvb-5992 Article history: Received: August 05, 2018 / Accepted: October 25, 2018.
Corresponding autor: Fábio S. Mendonça - fabio.mendonca@pq.cnpq.brTipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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Registros recuperados : 5 | |
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